Fix MCP protocol compliance and Windows compatibility

This commit fixes two critical issues for MCP STDIO transport:

1. Logger fix (src/logger.ts) - CRITICAL MCP protocol compliance
   - Change all log levels to use console.error() (stderr) exclusively
   - Previous code sent info/debug logs to stdout via console.log()
   - MCP protocol uses stdout for JSON-RPC messages
   - Logging to stdout corrupts protocol communication
   - Impact: Prevents intermittent MCP failures from log pollution

2. Windows compatibility fix (src/index.ts)
   - Remove import.meta.url conditional check that fails on Windows
   - Path separator differences (forward slash vs backslash) cause
     the file:// URL comparison to fail
   - Server now runs main() unconditionally as intended
   - Impact: Reliable server startup on Windows

Changes:
- src/logger.ts: Use console.error() for all log levels
- src/index.ts: Remove 'if (import.meta.url === ...)' check
- src/index.ts: Add explanatory comment about Windows issue

Tested on Windows 11 with KiCAD 9.0.6.
Integration tests confirm 36KB logs to stderr, 0 bytes to stdout.

Fixes: MCP protocol corruption, Windows startup failures

src/index.ts

@@ -107,13 +107,12 @@ async function shutdownServer(server: KiCADMcpServer) {
   }
 }
 
-// Run the main function if this file is executed directly
-if (import.meta.url === `file://${process.argv[1]}`) {
-  main().catch((error) => {
-    logger.error(`Unhandled error in main: ${error}`);
+// Run the main function - always run when imported as module entry point
+// The import.meta.url check was failing on Windows due to path separators
+main().catch((error) => {
+  console.error(`Unhandled error in main: ${error}`);
   process.exit(1);
-  });
-}
+});
 
 // For testing and programmatic usage
 export { KiCADMcpServer };

src/logger.ts

@@ -87,20 +87,9 @@ class Logger {
     const timestamp = new Date().toISOString();
     const formattedMessage = `[${timestamp}] [${level.toUpperCase()}] ${message}`;
 
-    // Log to console
-    switch (level) {
-      case 'error':
+    // Log to console.error (stderr) only - stdout is reserved for MCP protocol
+    // All log levels go to stderr to avoid corrupting STDIO MCP transport
     console.error(formattedMessage);
-        break;
-      case 'warn':
-        console.warn(formattedMessage);
-        break;
-      case 'info':
-      case 'debug':
-      default:
-        console.log(formattedMessage);
-        break;
-    }
     
     // Log to file
     try {