fix: apply unannotated-reference fix to find_unconnected_pins and get_elements_in_region

The same reference-lookup bug fixed in check_wire_collisions (where
PinLocator.get_all_symbol_pins always resolves to the first symbol
with a given reference) also affected:

- find_unconnected_pins: would check wrong pin positions for all
  unannotated components after the first, producing false connected/
  unconnected reports.
- get_elements_in_region: would return wrong pin coordinates for
  unannotated components in the queried region.

Both now use _compute_pin_positions_direct (fetching pin defs by
lib_id and applying each symbol's own position/rotation/mirror),
matching the fix already applied to check_wire_collisions.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

python/commands/schematic_analysis.py

@@ -293,11 +293,13 @@ def find_unconnected_pins(schematic_path: Path) -> List[Dict[str, Any]]:
         if sym["is_power"] or ref.startswith("_TEMPLATE") or not ref:
             continue
 
-        pin_positions = locator.get_all_symbol_pins(schematic_path, ref)
+        pin_defs = locator.get_symbol_pins(schematic_path, sym["lib_id"])
-        if not pin_positions:
+        if not pin_defs:
             continue
 
-        pin_defs = None
+        pin_positions = _compute_pin_positions_direct(sym, pin_defs)
+        if not pin_positions:
+            continue
 
         for pin_num, pos in pin_positions.items():
             px, py = pos[0], pos[1]
@@ -307,9 +309,6 @@ def find_unconnected_pins(schematic_path: Path) -> List[Dict[str, Any]]:
             if is_connected(px, py):
                 continue
 
-            if pin_defs is None:
-                pin_defs = locator.get_symbol_pins(schematic_path, sym["lib_id"])
-
             pin_name = pin_defs.get(pin_num, {}).get("name", pin_num)
             unconnected.append({
                 "reference": ref,
@@ -482,8 +481,10 @@ def get_elements_in_region(
                 "position": {"x": sym["x"], "y": sym["y"]},
                 "isPower": sym["is_power"],
             }
-            # Include pin positions
+            # Include pin positions (compute directly to handle unannotated duplicates)
-            pin_positions = locator.get_all_symbol_pins(schematic_path, sym["reference"])
+            pin_defs = locator.get_symbol_pins(schematic_path, sym["lib_id"])
+            if pin_defs:
+                pin_positions = _compute_pin_positions_direct(sym, pin_defs)
                 if pin_positions:
                     entry["pins"] = {
                         pn: {"x": round(pos[0], 4), "y": round(pos[1], 4)}